Gene

pals2a

ID

ZDB-GENE-050506-35

Name

protein associated with LIN7 2, MAGUK p55 family member a

Symbol

pals2a Nomenclature History

Previous Names

im:6899520
mpp6a

Type

protein_coding_gene

Location

Chr: 16 Mapping Details/Browsers

Description

Is expressed in cephalic musculature; hypaxial myotome region; myotome; pectoral fin musculature; and somite. Orthologous to human MPP6 (membrane palmitoylated protein 6).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

5 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:6899520 (8 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With pals2a Human Ortholog

No data available

Associated With pals2a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR020590	Guanylate kinase, conserved site
Domain	IPR001452	SH3 domain
Domain	IPR001478	PDZ domain
Domain	IPR004172	L27 domain
Domain	IPR008144	Guanylate kinase-like domain
Domain	IPR008145	Guanylate kinase/L-type calcium channel beta subunit
Domain	IPR014775	L27 domain, C-terminal
Family	IPR050716	Membrane-associated guanylate kinase
Homologous_superfamily	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Homologous_superfamily	IPR036028	SH3-like domain superfamily
Homologous_superfamily	IPR036034	PDZ superfamily
Homologous_superfamily	IPR036892	L27 domain superfamily

Domain Details Per Protein

Protein	Length	Guanylate kinase, conserved site	Guanylate kinase-like domain	Guanylate kinase/L-type calcium channel beta subunit	L27 domain	L27 domain, C-terminal	L27 domain superfamily	Membrane-associated guanylate kinase	PDZ domain	PDZ superfamily	P-loop containing nucleoside triphosphate hydrolase	SH3 domain	SH3-like domain superfamily
UniProtKB:F1QKE3 InterPro	550
UniProtKB:A0A2R8Q1T2 InterPro	539

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	mpp6a-203 (1) Ensembl	Ensembl	625 nt	Select Tool ZFIN BLAST
mRNA	mpp6a-201 (1) Ensembl	Ensembl	5,714 nt	Select Tool ZFIN BLAST
mRNA	mpp6a-202 (1) Ensembl	Ensembl	674 nt	Select Tool ZFIN BLAST
mRNA	mpp6a-204 (1) Ensembl	Ensembl	925 nt	Select Tool ZFIN BLAST
mRNA	mpp6a-206 (1) Ensembl	Ensembl	1,949 nt	Select Tool ZFIN BLAST
mRNA	mpp6a-207 (1) Ensembl	Ensembl	1,919 nt	Select Tool ZFIN BLAST
mRNA	mpp6a-208 (1) Ensembl	Ensembl	1,847 nt	Select Tool ZFIN BLAST
ncRNA	mpp6a-005 (1) Ensembl	Ensembl	789 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations